NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0000485

Scaffold Ga0334977_0000485


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0000485 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24801
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (56.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008752Metagenome / Metatranscriptome328Y
F029665Metagenome187N
F033792Metagenome / Metatranscriptome176Y
F073147Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0000485_19440_19634F073147AGGAGMNFELYEVWAVDEAGHEELVETTSSRKEALEIAEANLGLGITEAVVYQEDENGDLHEIKRFNHG
Ga0334977_0000485_20209_20574F008752N/AMKEEMMSEPLTTLKPQTPAEGVLKRSDWGDAITYQVVCECQDANHDHNVWVEADDHYVTVTTYTTQKSEWWKLNRWQTIWILLTKGYVKYEASIIMTEQQAVNYAETLKKAIQDVKNFKQ
Ga0334977_0000485_20534_20761F033792GGAMSISDKNQHSIEDLYTKYLQFTSVMMEEYKDIEIAGIMVTQALSMYRTVLPEEDYQRMVKSIYERRNDVRTFNDT
Ga0334977_0000485_21655_22038F029665AGCAGMKEKVDQFCKNYEIQIVDDQKRRARYHPPKYFTDPLRADIVNRDFVKFETEKVFTVQIPESRFRALVEMEQRFFGNHTHGYSDADMFSMLMEKEREESWYRQSNTAVQKAYEQYSIMLNLAGYQRKI
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