NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0001068

Scaffold Ga0334977_0001068


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0001068 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15919
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (65.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F002241Metagenome / Metatranscriptome579Y
F004233Metagenome447Y
F013317Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0001068_10335_10928F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADNNPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTGAPKKAIQTTKPELASFIKEQRPNDPEPIVWDVTAIAAELGAEIIDELPLCKCGRGPMILKSGTKDGKEYRGYTCPSKDRADQCPARWMRIGADGHWVFQK
Ga0334977_0001068_10925_11272F000545N/AMKQDAHPFKCSTCLAVTPHIELYRYETSDIPEAPEEVWLIECQRCFLQRIIYPSDRVASKEDDITRCDKCGNWKMKSGKCRVCRLAAGFEQISVKYWTGNATMERPYNDEQTPLY
Ga0334977_0001068_11250_11444F002241AGGMSRPHSIRYIRQLMEWGFDKEFIAKDCGINIHSLEVRLNRAKKREQRDGNQRTEPGTSSGESDS
Ga0334977_0001068_4851_6101F004233N/AMTLWTPDWKILVNGDELTTVTLSNLTITSGRQDINSPTPAGYCSLEVINTDGTNYDFGINTAVTIEVKDTTGAYVAIFGGRVSDLRQIVRSAGSSAVITSLRITAIGALAKTQRAIFDGNLAQGLDGAQITDLLDDLLLSSWNELPPAETWATYEPATEIWSDAGDIGLGEIDAGEYTMVSRQITDSIIYPIINQIASSALGYMYEDANGNINYADASHRQDYLIANGYTDLDASHAIASGIGIIQRQGDLSNKIVMDYGNNFNNSYTAEDLDSQAEYGLFAEQFNSYLKNAADVEDVADRLIQLRAWPRNTFQSITFALQSPEIDNADRDALLNIFMGQPVRITNLPLNILGGEFTGFIEGWTFNASVSGLSVTFLATPTEFSAFAQQWAQVNAAESWNSVLNTLEWQDAIGVIS
Ga0334977_0001068_9147_9383F013317N/ALIEKKKWDYLADIRSRTGAKTLYINATPKGIYQFDLGALIEPEWVLKSLPITTDFSNKAHSERLCGFFDIRLAELLLV
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