NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0003671

Scaffold Ga0334977_0003671


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0003671 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8827
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011136Metagenome / Metatranscriptome294Y
F040621Metagenome161N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0003671_1099_1533F011136GAGGMDRPQQDIEDIVCRGKVEAYVNRALWLSWHSARSDYAVKYRKYYELHVERQVDDSKQDETWIGAFIDGEYLYNAIGRLNEFDAILLRLYSKPDFDYKELSRETGIPYNYLRTSIHRALKRIREYVKLQRSLSHTAREIEYLQKM
Ga0334977_0003671_1511_1918F040621GAGLNTCKKCKFYNGTFGTCGTPIVGNNVNPEENDVTYYKEKIKLCGCFMDVKTKFRFASCPARKWFAQDMSDEEIAALDTFIGKISKANKIQPEDLQMLYYWYSKITKKHERPSGCASCIRDLITEFRRQLGKIDKP
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