NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0008734

Scaffold Ga0334977_0008734


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0008734 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5789
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017470Metagenome240Y
F027440Metagenome / Metatranscriptome194N
F044452Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0008734_1_453F017470N/AMSDLMMRNQILGLRRAGMSVEEVAAALEVDIMVVKLALESVGGSSVLRKEALKEDDITDDVSEAEAKEMMGIIKNIARDEESGVYARLNAAKYAHGAKRGYHKRHLDLNVGSGELLLKINEAYASASMRARAALGGQSLTAKEITIEAPIT
Ga0334977_0008734_3184_3444F044452AGGAMTNRCLRCLQIIDSDRKALGFSRCISCQPQWTYKGALNFGHKTGGSVQPLHPDAFKVHKRVTHRSAKGTNGKSFQQGTTLITIKDA
Ga0334977_0008734_3961_4605F027440N/AMSTKNLELVASFAGSVFQSDTDGNPQFATHERHVRKTAKSPERTVSFQAPILSVTDLAYYIRRGEALAEIPTEHVTKVKNEDGSVTETKRISNALSDLVQAELLDIAEDASEAYLSKGNTPDYFAAFIYGVSADRETEKSVLKKIDGIKSEIGSLVFALAGEWTEDTARSLGVSDKDAAIAKQSNLIGSLAQLLAKANELSSAKAKREAKKKSV
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