Basic Information | |
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Taxon OID | 3300033978 Open in IMG/M |
Scaffold ID | Ga0334977_0012434 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4850 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (31.25%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000957 | Metagenome / Metatranscriptome | 821 | Y |
F002038 | Metagenome / Metatranscriptome | 600 | Y |
F003714 | Metagenome / Metatranscriptome | 472 | Y |
F006659 | Metagenome / Metatranscriptome | 367 | Y |
F014261 | Metagenome | 264 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334977_0012434_1136_1360 | F006659 | GGAG | MRKDSKPSPTDYRVIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPGYTRMSLADIEATLKAGEVTKAEPTK |
Ga0334977_0012434_191_436 | F002038 | N/A | MADTPKGIERIAATVPGQYALLLLLDGYPYVEMTARKHADFLSDLNAWKRKTYPSLSRSVVRFFTLAPNGEIKELTFTPVR |
Ga0334977_0012434_2941_3228 | F000957 | GGAGG | MSSFKHLDGMVALLSEIYEINERIMTGDICSSKTAIQSDRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELADGFEVAGSQVPRRV |
Ga0334977_0012434_3710_3976 | F003714 | N/A | MPNAHHPYTETLTFAGRVIPLKRPMAEFAARRLQAILPQIAALNAAGKSQADAAAALGTTVCTLRTWLDLTGTTWVNLNRRGPYKTRK |
Ga0334977_0012434_4310_4447 | F014261 | N/A | MKTLITLTFVIIFGWLAVVTFYGPELYRAINGPEPVKAKAVRSHR |
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