NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334977_0286795

Scaffold Ga0334977_0286795


Overview

Basic Information
Taxon OID3300033978 Open in IMG/M
Scaffold IDGa0334977_0286795 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME28Sep2014-rr0002
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026004Metagenome199Y
F042339Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0334977_0286795_103_519F026004N/AMEENKLRNTVLIAAVAAVVLIMIIVGVRSCKEKEDPAIDRLRSINDSLYDVIEQNNQKTDSLFIKIDSLNIHQDTIIQNQQITNEIYRNETYNILSATPANANAQFRATLKKSDSLLKAGFYSRTYNLRSATFQSQLQ
Ga0334977_0286795_521_796F042339N/AMMYWYGTAMEIDSLYQLERLKTTYYAKITGIQAQSYETLAEIYANKQAIEKAIATEKDNEIKELKKKNRRLIITNTALTLGITAVAVSTIYF
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