NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334978_0045168

Scaffold Ga0334978_0045168


Overview

Basic Information
Taxon OID3300033979 Open in IMG/M
Scaffold IDGa0334978_0045168 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2292
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F090064Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0334978_0045168_1166_1411F002227AGGMKLTIQSKTNAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAADGSQILELIIEREQGDRICPAFEGNPDEEKLP
Ga0334978_0045168_1943_2197F001964AGGAGGMSRNLFAPTRYKVQISGAIGWADLKQRTVSYETVIFATRKEAEQAAKDLNPNEYTQGRIRVVPKDMAEDYDVYPVVERDGGKSV
Ga0334978_0045168_437_577F090064AGGMKVFWTVYFGKFRRSEYTLQGPNGKRDAQRLAKRLGGRVVREKGQQ

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