NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0013636

Scaffold Ga0334981_0013636


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0013636 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4569
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039099Metagenome164Y
F088773Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0013636_3321_3752F039099GGAMREPTQRFWDAMIIKSWQNFDSCYKLNIWAREEFGKYPQHLELKRTQNCFGSGTQGVRVWVAQYMPALSEQLFALPKERHIELLDWLAKSKVDSLSSKGSKVSKYYHAARSAMKAAERRATQKTWSDNLEKTLNRNNRWTTVK
Ga0334981_0013636_454_597F088773AGGAGMKKIIAVLFIAMMSTSVMAQVKCESDGRGGMCCWDIGKQGPWRPIGC
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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