NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334981_0154784

Scaffold Ga0334981_0154784


Overview

Basic Information
Taxon OID3300033980 Open in IMG/M
Scaffold IDGa0334981_0154784 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME09Aug2015-rr0007
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F016116Metagenome / Metatranscriptome249N
F022867Metagenome / Metatranscriptome212N

Sequences

Protein IDFamilyRBSSequence
Ga0334981_0154784_1_342F022867AGGMKSYILSCMVIENAAQNIQLGIIGGKGVTTILEYNIEISRQIDGLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVD
Ga0334981_0154784_402_701F016116N/AMVEKLAKHERLALYNLTEKEIDQLEEELVKQFPKEQFAETYIEMWQIYRDTKAIQIYSLIEAKYPGSHNEEKRAVIWFEIATLFPHRLHELVKSLRKWN
Ga0334981_0154784_729_983F013499AGGAMSEVMKDIGITISGIKGLIMLLQAHQRELVGKGEPDPSEGSLEAARLAIDQLKEKIEAIVGPEESTGAEGFEVEVHESEDQSQT
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