NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0000860

Scaffold Ga0334982_0000860


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0000860 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19034
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (74.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016388Metagenome / Metatranscriptome247N
F073274Metagenome120Y
F102851Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0000860_397_642F016388AGGAMNSMIAKTLDLTQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELTSEEISAAFGTKAKKK
Ga0334982_0000860_3_233F102851N/AQIVVEELSDTQLEAFTEAIQEAPTEIKEAFEKTIDIFSSQFENYVPTGSNIPVGERRTLVAVGALIAAIPPTRIRR
Ga0334982_0000860_9143_9394F073274N/AMNDYYPPALWIDTDTGTYGDAKRLVIIDVSEWSDDEIGVWETMTDSERNGYGLAYAEWSHSYGTTPDLAQALTPSEYMREIGR
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