NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0000862

Scaffold Ga0334982_0000862


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0000862 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19017
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (39.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024249Metagenome206N
F043238Metagenome / Metatranscriptome156Y
F082108Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0000862_13306_13746F082108N/AMIDAATDFKGATGASITHYSTRTGDMGNPLRNEFLELYADSFTKEDWVYYLDDDNILHPKFLEEWGNLHSLDCSIVTWGQIGRLRPTDQPRVGNIDTACYMFKPYDLPNLRFEMTYEADGTFAQAASEQGTLICVEQYLCYYNALR
Ga0334982_0000862_16612_16785F043238N/AMKYQTISQLLRELKSVDISESIIKDIETIEQVHLRFAYHDALLRVPFEEWYEATFKK
Ga0334982_0000862_16800_17126F024249N/AMIFTYNDLKFWLEDADLLPQSYWDALEDYDPDNKNSDEILAKWLGFAHVADFYEYEMQITYIEESYNEDGYTNTTAYPTTSIYRDIPNLANDIYIKWMNWATQVASEE
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