NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0001466

Scaffold Ga0334982_0001466


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0001466 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14772
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F051883Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0001466_12669_13070F051883N/AMAYADLQSLTLVGRIADLKVLQTEDERDCLAVTLYHRITQDSTITVRFLNSNGLLTAYKNNNLVVGQELHVTGKIQGIRSFYLKDDELIPLKQPEFQLKVIDYAFGSKPQPKDEPKAVVKKPKAQPTLEPVEL
Ga0334982_0001466_8347_8604F001807GAGGMSVLAIEETSIENNRVTVTAIVEDIRLLYPATYFEPAEYAPALCSASFELDDDTQVPADEDSFCSYLTDLDLEWKPVDTSDWDLD
Ga0334982_0001466_9498_9716F001165N/AMSALNESPKPRIPDALDFQRLQAMQIVAKMKEAADRNGIGFVGGFVSPDGEKFVMTNMSDEDTNMLLPENLQ
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