NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334982_0002240

Scaffold Ga0334982_0002240


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0002240 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12015
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F084121Metagenome / Metatranscriptome112N
F091646Metagenome107Y
F093739Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0002240_1610_1867F084121N/AMPRKKVHSPSDFILKRRFINKFNEFTEWQDIGYGEFLSIEDVQEKIKLLIQNYKNKHMEVHFEMNGKLLDFNGNEISHPIKFTPK
Ga0334982_0002240_2006_2236F093739N/AMKYSKEQIKRAVRSCVFCERNGIKADPDMEDHSEAGEIFFNHFMGMVEPRLTELLENPRYVIKLQLITRHLHHNYR
Ga0334982_0002240_3421_3957F001775N/AMIDQRIQIAILAFLGGVILAFVVYPRPEVETVYKFETVTKTDTLFVDKLETVYIPKTTIKTEVLRDTILIDFKPQISLFKTIIPFEYGNTYLSGEVLGEVLKMTATNDYKIPVVTNTITNTETKTIIQKPKGLYLGAGVNSLLKPSASVSYLDNKYLFQYQYQPLQKVHQIGVSKKLF
Ga0334982_0002240_6595_6798F091646N/AMNLLQKDEIGVPSTLVAFVANVFQAIGIDLLNVVLTMIISLLSIVYLVYKIKNEKAVYEKRKDEEGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.