NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0012410

Scaffold Ga0334982_0012410


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0012410 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5031
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001617Metagenome662Y
F007261Metagenome / Metatranscriptome354Y
F011285Metagenome292Y
F061671Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0012410_1482_1658F061671AGGAGMNGKAICPKCKGNGYVTIQMQNEKTPHHKDCTYCNNQGEIVLDNKKIERYLNYSRMVQ
Ga0334982_0012410_2_148F001617N/AYAEFRRVREITLNRNPIAMAKTLDNFSTNKQYEKHVIEVILKLRNETK
Ga0334982_0012410_3695_3868F007261N/AMTKEIDTIISLPTYRQYWVHTKPYGHDIVIWTDTGKVTIQCKWPDMERSNNNRVKRK
Ga0334982_0012410_4856_4993F011285N/AMRYVFILLLLIGCSKDMSFDPTVTISKEIIKFLYSESNKKEPAAE
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