NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0019069

Scaffold Ga0334982_0019069


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0019069 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4012
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020324Metagenome224Y
F048668Metagenome148Y
F075836Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0019069_1692_1970F048668AGAAGMIRFFRSAPAIYADICAQLDAAYGYPNAATKTERSLPLAADLPSDGQGRVYLAISAEYCDYNLPSELLPQLIAAGLVEEITAAQYAAVLPPV
Ga0334982_0019069_3454_3711F075836GGAGVRFLILSLIAVAGCVATLPDDPTISADLACEVARAVVQLRAAPDATPDNKPKPGDKCPNCDGRGYVGDGTVKVKCQPCEGTGRVK
Ga0334982_0019069_82_291F020324AGAAGMSPVVTLRFRLPDEQGEFDAARLGRQALLTLWEIDERCRSLLKHGDPSDETARLVEEIRGMIPGEMLEV
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