Basic Information | |
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Taxon OID | 3300033981 Open in IMG/M |
Scaffold ID | Ga0334982_0021408 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3761 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (100.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000821 | Metagenome / Metatranscriptome | 876 | Y |
F003212 | Metagenome / Metatranscriptome | 500 | Y |
F005558 | Metagenome | 396 | Y |
F037113 | Metagenome / Metatranscriptome | 168 | Y |
F038999 | Metagenome | 164 | Y |
F059896 | Metagenome | 133 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334982_0021408_228_386 | F000821 | AGGAGG | MNREYLEAKVDLCLNQAEIDLQQKEIARAIANLRRANSALTQLFGFEEEENE |
Ga0334982_0021408_2473_2643 | F059896 | AGGCGG | MDKCLWCDNMARVTVSGGYVPRYLCAFHASELCESIGDKAGAIKFAQLMAGDRVSA |
Ga0334982_0021408_2643_3089 | F038999 | GGAG | MTNTQETKGKLSFPCSCNGCRNYPTRPAEIWHESQIASKAQGYFFTRETMRFFNSRIADFKPVGISPRGVDSLMVIVSNKRDNDPRYYEIVTLCPYGELAREWATDSTGAPITQYETLNKARKSARWNCTIAPQLCDCHGCQLDKAGR |
Ga0334982_0021408_511_651 | F037113 | AGGAGG | MNKWTVWVGAYEVNWQHYAYKIDAERVAEFYREVKGYDDVVIKEVA |
Ga0334982_0021408_744_887 | F005558 | GGAG | MSESISWSELAELTHATQVEHFNFCSCEDLDPHEHPYADCPKGEGNE |
Ga0334982_0021408_880_1044 | F003212 | GGAGG | MKDRYLVTLEIETYDGDPKSWNWDYIFTGEDDIKVIETQWKGRVLPTSEGESNE |
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