NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0024280

Scaffold Ga0334982_0024280


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0024280 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3504
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F014142Metagenome / Metatranscriptome265Y
F017995Metagenome / Metatranscriptome237Y
F024319Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0024280_182_394F014142AGGAGMNSLNVSVVVEPTHPMSSSNTKDKNIFRLANGNYISRMAYVYMVADKGLISHRYLSPNESQWVLSNRKGN
Ga0334982_0024280_2401_2565F017995AGGAMAKVKQYLEIISAECNECGGAGFVFWGDENNYDCEPCECVADVADELTVDWVNG
Ga0334982_0024280_396_548F024319AGGMTNRIWESRNDYHTPSHYVACSNGCGRVTAWTLCVMCGGNYATHNTLGVR
Ga0334982_0024280_962_1114F003690GGAGMTISGFELVISNEYGLEFDSFLGAIYLPWHTIIITTLAVIAYKIYKRFYR
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