NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0057829

Scaffold Ga0334982_0057829


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0057829 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2126
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031492Metagenome182Y
F032578Metagenome179N
F049615Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0057829_1505_1720F049615AGGAGMTPDTVNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMHELEACRTTLTQAHSDISRLRVYLAQGAEL
Ga0334982_0057829_1883_2062F031492GAGMSQYNKGDKVIIDDESGVIESVFVGAEGTLYDVRYTAMNIMIAVDVPEEDIQPWQADEQ
Ga0334982_0057829_456_887F032578GAGMNDPIEGRAYDVRSEDILALNYIKTQIQSLDHERRNEYATLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYLKAGEALGHLNAVQAELFAQICYGITVDQVTIQYIPEQNTFRVQEVRQ
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