NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0188365

Scaffold Ga0334982_0188365


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0188365 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1027
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006181Metagenome / Metatranscriptome379Y
F019468Metagenome / Metatranscriptome229N
F070026Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0188365_354_809F019468N/AMTIEKTYKLTIKDTAYFLTEEEVTKLYEQCRMALNIKDRPTTNPVKPTIPYPYDTYPWYTPKYPNDTGTPYWTGPTTTCGTINAGEGICVKDTNWQPNLCNTVKSSNGINFLSDDMETIKENDKWRSSVQQALDKLSAKTNVTTSDGTTIR
Ga0334982_0188365_3_347F006181N/AVIYPDEAVHSFVMETDMVVSDILERVFAEWNHGSGMESELFIRSKKRSLSVNDIVCVNGKYYLCESFGWNEVTPQFVNELEEEVSNHPNRIQGAWFALNDVMYARKSNNKLELV
Ga0334982_0188365_813_1025F070026N/AMKSIYIEKLAEVPGGLPARNMDEHIDGQYQGDSHSIPVEYNLEGVLSYDIEVGKPVVVGRTKRNGVEAYGV
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