NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371488_0040176

Scaffold Ga0371488_0040176


Overview

Basic Information
Taxon OID3300033983 Open in IMG/M
Scaffold IDGa0371488_0040176 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3028
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023078Metagenome / Metatranscriptome211Y
F064327Metagenome / Metatranscriptome128Y
F086482Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0371488_0040176_2839_3027F086482GAGGMLTDRETYRQAVIALYLRRPDTPRRLSRFDLRLLDQFWQRQIPLTVIETAFLLASLRRAARRP
Ga0371488_0040176_388_594F064327N/AMTDQSSLRSSPCVNLTVRPAPARVEAPAVAEFRPSSREAIRAGWVVCQICGRRGRWVNPFSEVKHDFR
Ga0371488_0040176_79_345F023078N/AMVEAPLGAQTLFIAAVGLAALQTAGFFPATGTAITLAAVTVAAEIKHRATGRKLTDALAKNLGTSHRHRFREEALDNRRRSWQDDSRD
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