NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0000457

Scaffold Ga0334989_0000457


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0000457 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19791
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033794Metagenome176Y
F073552Metagenome120Y
F090397Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0000457_13088_13249F033794N/AMNIVKIYKGDDTIETFTIKSENTIDSSQYVVLWDCKEEIYIDEELIETKYHTV
Ga0334989_0000457_17074_17514F090397N/AMILEELAKKDAQWRKMALQICKDKDLADELVQEMYIKVSNKTKSLSDGYIFVTLRSIFYDSLKSKDILIDDFRSFEALEEEIIDYIIEEIDYKELSKGLTWYERTMFELSTLVGQRELSRQTGIHLQTIHRVNKMVKLKLNGKKKN
Ga0334989_0000457_4645_4953F073552N/AMWIFNLTAPYQFKCIPRGYNSGVITFFLRDELKDITHEIEVTGVYYQNGVLVLIFNDYIMKEGQSFEIVINENDELIYRGKAFATAQTDLENFELNKGVLKV
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