NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0002659

Scaffold Ga0334989_0002659


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0002659 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8708
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039945Metagenome162Y
F047497Metagenome / Metatranscriptome149Y
F088300Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0002659_3813_4058F039945N/AMVVGDNKSTATQNAGESMAISIAMAMQWYDAGRIARWITSGASLEATGCSHRASACAVLPRRLPWLTNSLKQHKTLTKNYF
Ga0334989_0002659_5858_6220F088300N/AMGCCGEDYWVVDVAEIPVPPVFEKLFFEKVARLIQHTCDCNPEYSVEAFDWDWASFHKNILLPNRMHIRSVMQLSDTITDRVVYSLHFLLNEWNGDDEGENDEDVNVRFEKFFSVEDLDF
Ga0334989_0002659_795_941F047497N/AMVEAPNPLGVHPTSMSYVYKVFQHLDMLWIGIWVYPYTVTPVQGRGGF
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