NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0009100

Scaffold Ga0334989_0009100


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0009100 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5066
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014230Metagenome / Metatranscriptome264Y
F083434Metagenome / Metatranscriptome113N
F100410Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0009100_18_572F083434N/AMTYTTAAKTDKPTDWKALWISFGDGAFSKKNDSHGSELSFNRSSWRGECGLSNDGTCLRFPIFCMGCCDEDDWVVDVAEIPAPTVFEKLFFEKVARLIQYTCNCNPEYSVEAFNWDWASFHNNILLPNRMHIRSVMQLSDTITDQVVYSLHFLLNEWNGDDDEENDEDVNVRFEKFFSVEDLDF
Ga0334989_0009100_3018_3467F100410N/AMTPDAITRLFKEAYNTFPPLEGKPTDDDLLVIQECILPLLMVIPYDQLNGIHSLTAILTEAAKYESEHGNATFVRPVCLPLYDKNIADDATTVVRVHAEAAHKSRLNDYASYEAAERGVAKFLGDVVDEIWYNAQRRRDLLHKGHGHRD
Ga0334989_0009100_3485_3682F014230N/AMEIKFELDTDKAARATVAIAASYGLGRVSKGTEYPQLAFANAIALIIIIAILYSTHPAVKKTTPL
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