NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0260075

Scaffold Ga0334989_0260075


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0260075 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)937
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014230Metagenome / Metatranscriptome264Y
F100410Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0260075_1_372F100410N/AMTPDAITRLFKEAYDTFPPLEGKPMDDDLLAIREALLPLLMVIPYDQLNGVHSLTAIHTEAVKYEAEHGNAKFVPPVRLPLFDKNIADNATTVVRVRAEAAHKARLDDYTIYEAAERGVAKFLR
Ga0334989_0260075_397_597F014230N/AMEIKFELDTDKAARATVAIAASYGLGRVSKGTEYPQLAFANAIALIIIITILYSTCPADAKKTTPQ

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