NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310138_000628

Scaffold Ga0310138_000628


Overview

Basic Information
Taxon OID3300033986 Open in IMG/M
Scaffold IDGa0310138_000628 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - M2-7-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24408
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (82.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038199Metagenome166Y
F063614Metagenome / Metatranscriptome129Y
F087072Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0310138_000628_15877_16095F087072GGALRQNLPSVACAEIQLSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIEGK
Ga0310138_000628_2769_2987F063614AGGAGGMTYRKLYITIDTLVKTGLEKVNVLGVDEAQNDLWQIYEICQELMAFWDSELTEERIDELDEIMAELPLLKRV
Ga0310138_000628_6241_6495F038199GAGGMEYTQAEFLQIIQQYNSTDRRVIKTNLKRIMNIYNIKPADITALGYTSRNVYAWTNKSTKNIPLFEQALRISTRFNFNITEFLK
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