Scaffold Ga0334965_0072955

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334965_0072955

Scaffold Ga0334965_0072955

Overview

Basic Information
Taxon OID	3300033991 Open in IMG/M
Scaffold ID	Ga0334965_0072955 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1571
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_47_11	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Croatia: Zadar
Coordinates	Lat. (^o)	43.9359	Long. (^o)	15.5428	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105447	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334965_0072955_230_820	F105447	N/A	VTKKVIVRDFCENLKLKKYLIINELDTFILPWHQLCTTINQRKEVIKMKTLKMILKVILFASLLLTSSSAVTYGQDLPVPFDRMKEVAITQGQKNDDGAFMWEKTVENVEYWMVYSPSDQSIGCGQRTDSGSYGWGIAYGFKGDFQFVEARMGQIVNFLVIGEENAIEIVNQFFKEVEPLIENSKESPTEGKWVSI

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