NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0000029

Scaffold Ga0334992_0000029


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0000029 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)144450
Total Scaffold Genes213 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)145 (68.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012437Metagenome / Metatranscriptome280Y
F019322Metagenome / Metatranscriptome230Y
F038232Metagenome / Metatranscriptome166Y
F063367Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0000029_135676_135792F019322N/AMRYPDAYLAATSTTGSPTITNPTGYRVYTFTASGSITF
Ga0334992_0000029_20291_20563F012437N/AMKKDLVVNVLLRILATFAASGLGVIGAGTIAGVPVLKAVFMAGIAGVAVVIEGLSRAFLEDGKLSSSEINDVFNKVDKKAPVKAKANEAV
Ga0334992_0000029_31354_31500F038232AGGAGMKNIDGDKLRKKLEKLIPSCDMDVDNEGQVIIYTNLKETKNGNYKEIK
Ga0334992_0000029_45679_46011F063367AGGAGMNENSYRTAKTVLITATVTIASVFAFSFLKEQNRQDNEFFCNGASVNIKEGDTLYWIARTNCEGNTMNVVDELVRVYGTELTVGDTIFLPTHPNCELRMTDGGQVMEDCK
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