NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0000583

Scaffold Ga0334992_0000583


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0000583 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29686
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (23.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009202Metagenome / Metatranscriptome321N
F009600Metagenome315Y
F014228Metagenome264N
F015858Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0000583_1274_1681F014228N/AMNSKLNPNRLAMWTILLTATLAALSSCATVKPVLQSVIVRDTVIVTKTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLAFILVAAYFVKKWIDKLLE
Ga0334992_0000583_2467_2823F009600N/ALTYKIVVGKVPSLNAFYASKHWTARVKAKELVSREVMSQLDKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLLVSE
Ga0334992_0000583_27670_27990F015858GAGMANSISWGIIYCSTWFGQVDETTLSIQNQSAPPCFAPANEFVAQFETRVLNDGGTFEGFDCLTAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEDCLIDQLFILN
Ga0334992_0000583_4479_4790F009202N/AMYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKAKGREVQDDILHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDSEQMIYEIQRLQGIIEDSL
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