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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033992 Open in IMG/M |
| Scaffold ID | Ga0334992_0001003 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23009 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (20.00%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001298 | Metagenome / Metatranscriptome | 727 | Y |
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F002038 | Metagenome / Metatranscriptome | 600 | Y |
| F003583 | Metagenome / Metatranscriptome | 478 | Y |
| F014261 | Metagenome | 264 | Y |
| F015597 | Metagenome | 253 | Y |
| F053888 | Metagenome | 140 | Y |
| F098917 | Metagenome / Metatranscriptome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334992_0001003_16616_16939 | F003583 | N/A | MAKVKQSLSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS |
| Ga0334992_0001003_17345_17482 | F014261 | N/A | MKSLIALSFLIIFGWLAVVTFAGPELARAINGPEPVKAKAVRSAR |
| Ga0334992_0001003_17780_18040 | F053888 | N/A | MNQEPIDLITVGDRPIRLSRPVLPHAARRLAETLPQLNALNTAGKSQADAAEALGVSVGAVRSWIALANLSWSNINRRGPYAKRTK |
| Ga0334992_0001003_18867_19151 | F000957 | N/A | MSSFRHLDGMVALLSEVYEINERILTGDITSNKTAIASGRMKKLLHHYHEALHEDGAVKVSLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV |
| Ga0334992_0001003_20801_21040 | F015597 | N/A | MSDPKDFNPFDPISAAMGAIHGQNLLAAKDARIKQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG |
| Ga0334992_0001003_21033_21272 | F002038 | AGGA | MADIPKGIEKIAATVPKQFALLLFLDGFPYVEFTARKHADFLTDLNAWKRKTYPSFSRSVVRFFTLAPNGELKELTFTK |
| Ga0334992_0001003_21269_21625 | F098917 | N/A | MTNREYLRNILNQLAGEVSALRPTPEDSVTLAGSDLMQLQIAINEAATELERLDVENIEEAYHIKPIYDRIKAVIAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEHNPNDEDEAL |
| Ga0334992_0001003_22437_22871 | F001338 | N/A | MEPNNDRKPLKSIETAGTYKLKLIKPAFDKIRQWEDGTVSCRLFFLDDQGNCLSKSFSSKWGKPLAMLVGKYSGTFTQELRLDATPAEFMEYITPACGKTCLLGVEAEPSGEYNGKPQYKYKLTYPKGSQKPTVSEPLPDNPPF |
| Ga0334992_0001003_7550_7927 | F001298 | AGG | MSLYSEFLPDAKEMVADFAVAGSANSGAITFACLISDPAVQTVLEAGGYMERTQYNVRIPAATASWSLPDGSTGASTAIIVGGVPIASLAQGKKIVAGGKNVRITTQTYKPGSAWVTLVVIDDNQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |