NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0001369

Scaffold Ga0334992_0001369


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0001369 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19340
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (57.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018915Metagenome / Metatranscriptome232Y
F032259Metagenome / Metatranscriptome180Y
F048263Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0001369_18653_18787F032259AGGMVPHGEPVMLAKPVKASVYAFDQDKKLVGPSKVTLPAGWYVLPK
Ga0334992_0001369_18771_18944F018915N/AVNWIYQILKALLDWFRETPPTNIQHGKAPEDLKNGLADRIAGLPGLPSDKGGNGPAR
Ga0334992_0001369_8741_9178F048263AGAAGGMAFENFLQNAANFATAGLYNSLSGRDKELERQKLAEAEAFRANPELVREAAKYDPSIMERLGNLLTGGIYGQASGMNDKLEQRDMAKQQIIQDELQRRLEERMKAYGNPPVPEPVGSELNPDRSAMPMPVEPGTLRKKNTFAGGY
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