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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033992 Open in IMG/M |
| Scaffold ID | Ga0334992_0001795 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16805 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (66.67%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002052 | Metagenome / Metatranscriptome | 599 | Y |
| F016962 | Metagenome / Metatranscriptome | 243 | Y |
| F020159 | Metagenome / Metatranscriptome | 225 | Y |
| F025012 | Metagenome / Metatranscriptome | 203 | Y |
| F041732 | Metagenome / Metatranscriptome | 159 | N |
| F042755 | Metagenome / Metatranscriptome | 157 | Y |
| F061496 | Metagenome | 131 | Y |
| F085149 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334992_0001795_11341_11541 | F042755 | AGGAG | MFDTMLKLVLAIAVVVVLIAIGPWLVIWSLNTLFPVLAIEFTFWTWGAVVIMGTFFRANVSVKRKD |
| Ga0334992_0001795_13457_13810 | F025012 | AGGAG | MEQAQREYFVNRLNEIAREKVQAKAEALFGPTGRPEQPTWGMVFEGIASGEITLKEEKRDYTGPYLNPSDVVWPAMEAKVAELEAYRATVAREKQTAMDRCMLDTDAQQALTEFQGI |
| Ga0334992_0001795_14841_15017 | F085149 | N/A | MYVLQAQGLGDNEYEFYNVGVYDSTANLERAKQKFTQEWAEGGLEDVVLNVEEYLVNA |
| Ga0334992_0001795_15110_15289 | F061496 | AGGA | MSRHHLVVFANYCRDTGFTLVEALKYVGDNLETDAVSDDVAYAYESTYEELMQFVETQR |
| Ga0334992_0001795_3234_3632 | F016962 | N/A | MDMIELIIVGILGIIVGWHSAKTVHLDGFRQLLRALKVTEEDLLRAMIKIQSKEWQLDDVEGTKDHTVVDVKLEQQGTQIFAYRKSDDQFLAQGTDADSLIERLNQNLTPCRVVVAQEDGADLLQKNNTQTG |
| Ga0334992_0001795_4134_4316 | F002052 | AGGA | MAMREYQFVFNVVCAGEGKPDMARVEEMIDLTMQDLVFDDEFIAALDEKQSVTIQVNLVK |
| Ga0334992_0001795_6992_7132 | F020159 | AGGAG | MMELILAFVAGMIVMDFMYAWRMGIPQMLWYHFRNRNNPQPNFEQE |
| Ga0334992_0001795_9741_10394 | F041732 | N/A | MNKQGATMIFTADQVWGCAAAAQRINEGYFKEDQWDTAEAGVKIKTANKSLVKNWLARGDYSLVTAADIAAGQTARNHFKSYTFLAIAGRLNEFQETAMKLAAKEEFTGRDIYDFAVISCLPSVAVRDAANSELKREIYTSEQLQGAVGDNIVGDITVISARFNPDYNKHKITARMGESFVDFWFGKELEGELRIKGKIKTQRGNKTTQLNYVKISG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |