NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334992_0005513

Scaffold Ga0334992_0005513


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0005513 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9036
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (77.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008244Metagenome / Metatranscriptome336Y
F016150Metagenome / Metatranscriptome249Y
F035769Metagenome / Metatranscriptome171Y
F099313Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0005513_3153_3368F099313AGGAGMNFTQYMLDFYGPNGLYPEGFTSTQISLATQLYKCRLPEGEEFWGDSIDRERVRDIILAARESVVPEYSKI
Ga0334992_0005513_6473_6640F035769AGGMKKLLGMLIAFLGFSTDTYGTELERYIVGRNPKDAGDIERLTYEFHRKQSDWRFL
Ga0334992_0005513_6642_6929F008244AGGAGMFNTATYAFIDGVSDFKKKFVEQTVQHEGIKTALNGFVDAQAKYTKAAADAGMQSMMGLGMIFTSKDFYTEMGNQFKAMVPAFNIAKTAKSTKVK
Ga0334992_0005513_8039_8206F016150AGGMTEEKKSKNPFINLANAAKKDMKHPGLGKAPKSQGPKPTKGNGGATVVRRSGRGG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.