Scaffold Ga0334992_0021022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334992_0021022

Scaffold Ga0334992_0021022

Overview

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0021022 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4046
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023810	Metagenome	208	N
F070039	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0021022_1131_1352	F023810	AGGAG	MSIETPIEFELEQYKDRVDAMQMANELLREERDRFKDASDSLHTELEACRVTLKQAESVISRLRTHIAQGVEL
Ga0334992_0021022_3173_3517	F070039	GGA	MTPALIELMIDRLCGMYPTTNIARNTVKNAWVKDELMLDATEEDAKAVLKIAESLGHYPTQYEVKSMFMRVMGVRHAEVGCDKCDSTGFVYTDPDFDNDSTKTRYVKSCDCRTF

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