Scaffold Ga0334992_0028590

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334992_0028590

Scaffold Ga0334992_0028590

Overview

Basic Information
Taxon OID	3300033992 Open in IMG/M
Scaffold ID	Ga0334992_0028590 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3351
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003291	Metagenome / Metatranscriptome	495	Y
F010683	Metagenome	300	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0028590_2275_2601	F010683	N/A	MRSKSIKPVRKSTKTAPKKSKKVEAMNIIKHKRVVLDLIGNESFPEMVFVSAGPVWAKTIVGKRYVNLDRAKAIIEALDAEKLISKGAKSVLKEMDKAGITPLDVDTI
Ga0334992_0028590_2829_3110	F003291	N/A	MNQNTEKLVSVFNQDELSSLMTAMAGYAASKRKYGRSTGVETVVFNKIVEALLVSNYLNAEVIEVKADSNAPMGSAAYKAYEAMYDSDVRAHS

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