NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0061283

Scaffold Ga0334992_0061283


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0061283 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2105
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009808Metagenome312N
F054865Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0061283_534_722F054865N/AMEVKTKRFIIKYREGIVSVAANDVAEAIERFKELRIETSAKELTIVPADDMHKRREELFRKE
Ga0334992_0061283_834_1736F009808N/AMKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLHLPLLLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAIATVIALLELWFSIQGQSTGAEFYAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGIKEPRTRRRRLVKETTTTNISSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNAMSVEKINKGLLERRYYNDADESYTVDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNLEYIPSLGKWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH
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