NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0098491

Scaffold Ga0334992_0098491


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0098491 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1568
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F025032Metagenome203N
F030763Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0098491_1076_1381F022886N/AMITIKNWDKLTRMFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQKDHPHKDEYLMLCGVSEYWLNKKELEDVDSVYEAIVDAVVRHNLKVRV
Ga0334992_0098491_760_1074F030763GAGMLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMDIIREPLAESTDTYETAYHFSLVNDDVRPANIIEDVIYHSVLEDMELFGESLVHYLNTI
Ga0334992_0098491_95_463F025032N/AMISIVKIMEGESNTDKFTFKQRDAGGVRPSYQNTKLVKQGTAKDYVKYNVMVMGKFGGTIYYNKTDKSMIASGGESNTTFPPKRFKSIKDAIDYVGGNSTRSYNTSVPLDGMDTSFGTARYV
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