NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0267627

Scaffold Ga0334992_0267627


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0267627 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)815
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F030763Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0267627_161_472F030763GAGMLVIKNYKKIKNKYFGDWQVGKVEELPECYAMQVWSSIEKKSVTLAILREPMMDEVEYDTAYRISLVEDNKIPSNIIDDVIYHSVLEDMELFGESLVHYLNTI
Ga0334992_0267627_474_779F022886N/AMITIKNWDKLTRMFRSQIDIGELELYYEIIYYYPTLPSNEYYRITLSRISPPQQDHPHKDEYLMLCGVSEYWLNKKELENVDSVYEAIVDVVVRHNLKVRV
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