NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334992_0281121

Scaffold Ga0334992_0281121


Overview

Basic Information
Taxon OID3300033992 Open in IMG/M
Scaffold IDGa0334992_0281121 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)788
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003456Metagenome / Metatranscriptome485Y
F006653Metagenome / Metatranscriptome367Y
F028460Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0334992_0281121_13_315F003456GAGMKWLRKSGVIAERLTKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAQVEALNYAKARGLGEVPLSYVIVKRRNASIDQAWVIQDLAQWLKEKQ
Ga0334992_0281121_341_550F006653AGGAGGMSEELTNKYRDNLKIDALRADVDAIKVDLTNFVGALLQSGIVELVKDETGEIVYKINKAVLVDESVQQD
Ga0334992_0281121_543_788F028460N/ARAIHGKVSQLPALILTLGYDPTPGILKVAPVKNRFGKHTADGSVYAQLLVNYAAVQISDQNEFGWMLRKDTIAGYQGGYNV
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