NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0002961

Scaffold Ga0334994_0002961


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0002961 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12266
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003038Metagenome / Metatranscriptome511Y
F083779Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0002961_1972_2655F003038N/AMGLSTTDLGTGGSGLPKTISPGNHVLKINYVELEDFKFIDNAKHLLLHVETQPIDGFEGFMLDKDDESKGRYAGQIGKVKASQYAYADGVTKTGIKIQRDRSILIFLQSLCKTAGINEWFTEQDGKHDTIEDFVEAFNATAPIKDKFLEFCIAGREYEGKTGYTNYDMWLPKGENKKYAYGEVEEGKVITFDESKHLKKLETKEVKSFGEDDDFTPPSKTSSDFSLD
Ga0334994_0002961_5567_5983F083779N/AMAKMIFDKEETRNLMMMLQSEDADNHLIAFESLKNVDYNKYIGELLVLYKYGGHSLNNWQVNCKKVTDKLDKILDQAVLSSPRTLSLITKHRGSKASVELFMEFFIRDMSRMLESIGYPTDKFEIDIKFKDDGQTTES
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