NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0003672

Scaffold Ga0334994_0003672


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0003672 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11002
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015073Metagenome / Metatranscriptome257Y
F085385Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0003672_2209_2817F015073AGGCGGMGFLDNYETVNQKVQRLHATYPTNKIHTSIIDWNPEKGFILIECRIYRHYEDKEPAAIDYAHGMVGAYNPQMKRWYVEDTVSSAIGRCASVVLGADDKVSKESMQQVDEMPKAFVEDDPWAKPIWEDGFTTVKTAVEQIKDELGGELQAEAPICKHGHMIWKSGEKNGKAWGAYFCTEKTKAQQCPPQWMVLGSDGKWKERI
Ga0334994_0003672_2817_2960F085385GGAGMYSIGEVAMWLLIGVAIGFTFGYTAGLKEGKREGFIRGKIAARKAVQ
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