NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0063869

Scaffold Ga0334994_0063869


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0063869 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2253
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0063869_1254_1412F009883GGAGMNEISIVITCLIAGALWSVMSYSVGFKEGERQGYTRGRAVARHAVSAERKAK
Ga0334994_0063869_3_449F000903N/AMMDRIEEVQCMIAAIQHCHDRSADHSTRIVKDISWFAYVAQMGESMAAEYVVAKRLGYDYTPGITWDKSKADVGDHIEVKWSANPAGNLWIQESDRHDRDIAVLVTGSSPKMHIVGWIPIVMAKKPRYRNTSQNNWTVPQINLQPIETL
Ga0334994_0063869_446_640F000403GGAGMSDYMEIINPQLMVGRLYFQGEVVEEYKIAQCDKCSQLRKLDHFGYQKGYDKQDNIIWFCGDCR
Ga0334994_0063869_637_1254F001897GGAMAFMDNYEGNKERTDRWLATFPQGRLEAHIIEFDAEKGYVLVQAKAWRNQIESDPAGIDYAYGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMAMVKTESPAADYDYWTTKHGDVPSYQTAVEAEEAGTPSFGSSQDFAETVPSCSHGSMRWNQSKPDAAKSWGGYFCSEKVKAMQCTPRWYVLRSTGNWEPQV
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