NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0092353

Scaffold Ga0334994_0092353


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0092353 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1793
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009808Metagenome312N
F052594Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0092353_1540_1791F052594GGAMAAKTYGLDKKQIALCEAMIAKYPKGIKTNNVVSSASTLVSFYNSKDERNKQFYQYMNPERMVSLLWQVVKINNEKEDVKESAV
Ga0334994_0092353_207_941F009808N/AMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGIKEPRTRRRRLVKETTTTNITSTQPIKFTMAVCFMLTVAYLPAQNNHFFAYNTMSIEKIDKGLLERRYYSETDESYTVDTITYDMLSGINLWDGYSRTTYDNTMFMTYGTQNLEYIPSLGKWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH
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