NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0000480

Scaffold Ga0334996_0000480


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0000480 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25214
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (14.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003626Metagenome / Metatranscriptome476Y
F011667Metagenome / Metatranscriptome288Y
F012573Metagenome / Metatranscriptome279Y
F019827Metagenome / Metatranscriptome227Y
F020497Metagenome223Y
F028170Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0000480_10971_11288F003626N/AMKEFISKYQKAIVGTGAVAVLIVCYLQQKELSRLRAEPMVEVYLGGDIEKGRLIDSLQNRCDSLYDELFQAKVENGRYELSLEHLYEINPKAGKEFQEFMDHETE
Ga0334996_0000480_12426_12617F028170N/AMALKKILKGLEQSLKDEREIKPITILGNWFHNFKMRSIECRINDVKKELDNRKTKNNGSTENT
Ga0334996_0000480_3111_3278F011667N/AMNVENKIKDIVDMLEDAISFEDWGRVEDAQKELTFVYEEMQSSFPLDEWEEDELN
Ga0334996_0000480_7849_8010F012573N/AMSNQTKDWMEKLAKSYKLPAEQPAVNKEKVSLLKESQLKIIMGRDKKDLVNKK
Ga0334996_0000480_8366_8692F019827GAGMRSDRMLTKAKKDGVSNDQVQFYLGKLQAAGHMRLSNMSGFDVQIEPGLNPGQTLKETRITFASFLEKGMGEKPHMTGYLTSASDNDKQYKLKGWFNEDGTFRIELVN
Ga0334996_0000480_9532_9726F020497N/AMENLIKLESINCWAGSLGVMSCDDEGLPIMEESRSWGSLEAEWFQNLSVEDKEKVNQIINKTNN
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