NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0002935

Scaffold Ga0334996_0002935


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0002935 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11686
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (84.38%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008496Metagenome / Metatranscriptome332Y
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y
F047680Metagenome149Y
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0002935_10333_10539F043404N/AVVGYEVSTYKRTKMIDVTDPLLSELADHFVELHDCGGIELEQWETAHKFVKHFYNTEEVVEIRIGSKK
Ga0334996_0002935_10539_10796F016662GGAGMTYLVAMTEVIYDEEYIIKEMLETGEYGINAHPISHEAMVEFVKDREWQIDHSLFLTKYDIPVIITIKDEDGTDVFYAQNKLEVK
Ga0334996_0002935_10796_11044F030094GAGGMKLRGIFEGTFESVWSMEVPQLEWDSYLDKNPDFDENDRDDIEEMWDYFKRVVGCYDECDDSVDTEIHMTGIETYGVEVEIN
Ga0334996_0002935_11044_11223F093864GGAGMYEYNVEFVLESMVMITSVSFDERPTDEFIIEQARQHLINSYKIDPEVMYLQDVIVHEV
Ga0334996_0002935_5635_5784F047680GGAGGMAQMKTIEMVLMENHPDGIYNEQDVWEAIAESQGLDYSEIADGDLAEWL
Ga0334996_0002935_9338_9943F008496GGAMKKNGKRFLLTIPPKYDKLLLQPTKEHNVDFPIPATVTQMPESNATFVKEMVEAGELKPLYDPKATIVVRKGYYYGTPSDAKYDLENADDISRAFWRVDALQSTNNSNSKAQDKLKDYLVENFDEIGEEHANAIANIFGMDLSKEVEVEFNVTIKATVSMPINEDVSDLSIYDFNVTIESNESNYEILDFDADIDSIDERY
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