NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0020846

Scaffold Ga0334996_0020846


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0020846 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4260
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006182Metagenome379Y
F010161Metagenome307N
F043402Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0020846_1620_1817F043402N/AMIEKFKELALLLDEKETNNIITLLTLLLESWEDDKINLYTEIQDFELTTIYKVLNLFNEQTEEAS
Ga0334996_0020846_3152_3391F006182GAGGMKINFKVSGVMEIPDDAIKHYDVAGKLYALEFNDIMYMLQVCIVAEQGAGGFDILHQFEDMENHSITNLRYDDAEFCEG
Ga0334996_0020846_3_185F010161N/AMLYDALIDYVSYFYNCSDMPDSAKLNALKIFEALQDEKIDVIDFIPVMRQIQFSLDLLAA
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