NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335003_0204296

Scaffold Ga0335003_0204296


Overview

Basic Information
Taxon OID3300033995 Open in IMG/M
Scaffold IDGa0335003_0204296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)944
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002398Metagenome / Metatranscriptome563Y
F002406Metagenome562Y
F010618Metagenome301N

Sequences

Protein IDFamilyRBSSequence
Ga0335003_0204296_3_212F002398AGGMMLPLLHIFLLTSLDPIKNFVSLKTYISENAKVHCYVYFINEDLPDFPRVNIIEKNKFDFFAYLDTIGIE
Ga0335003_0204296_406_597F002406N/AMENLKWIRAMSDRLRDELSSEYDDETKDLIIRAFMQGLYQQPAIVEELKSSSLIESDYFEDKE
Ga0335003_0204296_661_882F010618GAGGMTLKDLIFKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVSLDYIDEVLHPALDTYSGYICRIVLCGEIEEED
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