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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033996 Open in IMG/M |
| Scaffold ID | Ga0334979_0000566 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27948 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (25.53%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006018 | Metagenome / Metatranscriptome | 383 | Y |
| F008688 | Metagenome / Metatranscriptome | 329 | N |
| F013524 | Metagenome / Metatranscriptome | 270 | Y |
| F019476 | Metagenome / Metatranscriptome | 229 | N |
| F022636 | Metagenome / Metatranscriptome | 213 | N |
| F030360 | Metagenome / Metatranscriptome | 185 | N |
| F099167 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334979_0000566_10168_10566 | F099167 | N/A | MNLVMNIKILNRTIDIAKAMCPLNLEHRCSHIAFLIRCGKIVHIGTNSCKSHPKTLEYDYKNHQLVGLHAELSVCMKSGKEDLKDFKMVVLRVDRTGKLNNSKPCCGCQSVIKQFNVDEVWYSNSYGQIVKN |
| Ga0334979_0000566_11703_11900 | F019476 | N/A | MNNINNKTKSARIILDIEWEAVDGSDLPSLWDWKRIKMPMDLTKVKYIGIQTPNGPENVTNWMGN |
| Ga0334979_0000566_12556_12795 | F013524 | N/A | MKTNQEVISRLRQFTSYNCNNLLDAKLCEDIRYLCDEVERFGREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF |
| Ga0334979_0000566_12782_13006 | F008688 | N/A | MNRFNKIMLGSLAAILLTAMTIEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE |
| Ga0334979_0000566_609_1130 | F030360 | N/A | MTEQTYMNLKDAVKRPVLSEKTVNRSNKAFVRMVDNYQKWNESITADELRETYEDDIFNCLFEYDLDGYNLAEFLRDKVHLEPDAGLVDILDDMIYVKKSLEDEMLKQWVKENFLTISDDVVGKKVNAKQGIRKYENLYITGIRPDTYQVTISDDSKKYGGYIVGFENVTFID |
| Ga0334979_0000566_6179_6568 | F022636 | N/A | MSTYRRATLQDLAKLGYVPNTQKYSEHIAFAKKYYPPEATTMVMVVHSEYNDCTYDNSFQYVIVYDKDGNELPPLKKTAKECRANWNIDNLPIPNTSSGHYGASESDEPLEDVVIPLTIDIPELYIKEN |
| Ga0334979_0000566_9185_9421 | F006018 | N/A | MKKYSIKTNDIGMCMSVGCDFYQTCSHNSVNMFYKTKRKFDPVLDESLCLSYGSGKNTKDYVDNCYPNVLKKIYESGY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |