NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0005887

Scaffold Ga0334979_0005887


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0005887 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8604
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011074Metagenome295N
F020348Metagenome224N
F020651Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0005887_290_871F011074AGCAGMQLVGINNPGDVKLAILEDWIRTEYGNFTINEVKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNSSGIKVWTKEDGAVAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFEEQILQNKTTFK
Ga0334979_0005887_3149_3385F020348GGAMEIEHRNYLDLHRPNYEMVQNGYVRNIDLNILKMYEHIYRKYMSPDFILTVWCSHCIFDMIKRLYEWYDLQPKNKKNG
Ga0334979_0005887_3857_4540F020651N/AMKVAILLLAQNRHDLTQRVINQNFFNSGYNADCFLIDNGSDTQETFNYPFAGYDLSKEKRGIAAGVNAGLRITQNYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEDLPPIVDGVHKTHTPFGDNFITRELIDAVGGYNEAYDPYGMQDRDYGERATITGFTNYYLPDMRSEHIGHDVGNGTDYRRMKDESLARAQSVWEKYQDIYHNQKNIRCEYFV
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