NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0023507

Scaffold Ga0334979_0023507


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0023507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4157
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F008496Metagenome / Metatranscriptome332Y
F016662Metagenome / Metatranscriptome245Y
F043404Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0023507_1365_1850F008496AGGAGVEFTTGEPTFGIPATITEYKPEYDPKATIVVRKGYYYGTPSDSKFEVENADDISRAFWRVDALTSTNNSNSKAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKTVDVEFNVTIKATISVPMNTEVSDLSVYDFDVEISSSEYEIEEFDADIDSIDEQY
Ga0334979_0023507_2273_2440F043404AGGAMIDTDNPLLQTLADDFVELHNVGGIELEQWETAYKFVKHFYHTEEMVQIIIRSKK
Ga0334979_0023507_2440_2697F016662AGGAGMTYLVATTEVIYDEQDLIKMMLATGEYGIHGHPISHEAMVEFVKDQEWQIEHNLFLDKFDVPCQISIKDEDGTDLFFAKNKLEIV
Ga0334979_0023507_3521_3952F007525AGTAGGMKTYEGVTVEYTQTIPTSKQMPEFYVWQEGAESYATITYLDRVVDIERNGEMYLCVLDLLEDGTISEDETVIRYSDDLEAAGITDDIQLMQYVKTMGNAGYETIHQNPWWEVFAHNEDMGEVYDTFYEAIDAGIDHILDDRNW
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