NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0232953

Scaffold Ga0334979_0232953


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0232953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1072
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003541Metagenome / Metatranscriptome480Y
F007116Metagenome / Metatranscriptome357Y

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0232953_141_524F007116N/AMRRQVPNITLDTTQKLRDRAGFKEFVLQVNTDTFTYSYTPNSISVQDDIYFTLNLENKRFIFDILEIDDVRDYIDVYLFGVKQPQDRYNAEVIGNNIIVTFVADITRLPNEVNAANFEIKGKIAEIV
Ga0334979_0232953_524_1072F003541AGCAGMARLIPRKQIEEQQNISSSFSVGQNLTVGRDVVISGSLFVSQSFFLGNDTGSKNEITGSVFLTGSLTIDGDLFVGAPDTVLSIKASGSLSSDDTQRYAGILAKDFGANLPTLYVSSTDGDDTNDGRTIQYPLRTIKRAASLASPGYDGRYGFDTGSISNGYVIKVQAGTYLEDNPVILPKNTT
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